Once the tissue sample is obtained it is critical to preserve it in order to keep the tissue architecture as intact as possible and to keep the antigen as close as possible to the state it was at the time of collection. The choice of preparation will also affect the storage of samples over time and the ease of detection of antigens.
The choice of fixative depends on the antigen to be detected as well as the type of analysis (e.g., morphology or expression).
Tissue fixation
Using 4% paraformaldehyde (PFA) is a method routinely used in immunohistochemistry to preserve tissue samples. While this fixation method allows good preservation of tissue architecture, it can cause conformational changes that have the potential to affect proper detection of antigen epitopes. Because of formaldehyde-induced epitope masking, antigen retrieval agents are usually used to increase the antigen access potential.
As an alternative to formaldehyde, a mild fixative, such as zinc can be used for paraffin-embedded sections. In addition to formaldehyde and zinc, alcohol or acetone can also be used for fixing IHC samples.
Tissue embedding
After tissue samples have been fixed, the tissue samples are paraffin embedded to enable tissue sectioning. Paraffin is generally used to prepare blocks for sectioning. Another tissue preparation method is snap freezing of the sample. While freezing is a quick method and allows preservation of antigen epitopes, ice crystals formed during freezing can alter tissue architecture.