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      Overview

      The analysis platform to extract insights from scRNA-seq data

      SeqGeq™ v1.7 Software is a device-agnostic desktop bioinformatics platform designed for the analysis of single-cell experiments and developed by the makers of FlowJo™ Software. SeqGeq™ Software includes a wide suite of informatics features including: V(D)J analysis, Seurat clustering, Monocle trajectory inference and much more.

       

      SeqGeq™ Software allows researchers to perform advanced analysis, data exploration and visualization with an easy-to-use drag-and-drop interface familiar to anyone who uses FlowJo™ Software. SeqGeq™ Software generates quality figures that are easily shared for publication and collaboration.

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      FEATURES




      SeqGeq™ Software has an intuitive drag-and-drop interface and lets you:

      • Easily import your scRNA-seq data from any platform
      • Perform dimensionality reduction with tSNE, PCA and LDA
      • Select populations of interest using intuitive gating tools
      • Identify, compare and contrast differentially expressed genes
      • Generate publication-ready figures using powerful visualization tools



      Powerful tools help you dive deep into single-cell gene expression

      • Differential expression analysis in volcano plots allows statistically rigorous exploration of up- and downregulated genes
      • Gene set enrichment analysis—to define biological function and identify target genes of interest
      • Quality control, which creates QC parameters used to remove outliers, debris and doublets
      • More tools including those with which to map developmental trajectory, handle dropouts and categorical variables, and many more available as plugins on the FlowJo Exchange




      Open-ended plugin architecture helps your research stay ahead of the curve.

      SeqGeq™ Software offers plugins that help bring informatics innovation to you quickly and intuitively. Current offerings include but are not limited to:
      • Seurat
      • ViolinBox
      • BatchLR
      • TriMap
      • iCellR

      Download and see the complete library of plugins available on the FlowJo Exchange!

      NEW UPDATES

      The latest release of SeqGeq™ v1.7 Software

      • This update contains several workflow improvements to streamline your analysis.
      • Issues with the Save function have been fixed. This extends to the auto-save dialog created when closing a workspace. It should no longer be necessary to always use the Save As function and make successive versions or save excessive copies of .geqzip analysis files.
      • Updated to run with Java 9.
      • Single-cell heatmap data in Layouts is now cached so updates to heatmaps following their initial creation will be faster.
      TRAINING AND RESOURCES
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      Basic Tutorial >SeqGeq™ v1.7 Software >
      FlowJo Exchange >FlowJo University >
      Webinars >Documentation >