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Overview

The analysis platform to extract insights from scRNA-seq data

SeqGeq™ v1.7 Software is a device-agnostic desktop bioinformatics platform designed for the analysis of single-cell experiments and developed by the makers of FlowJo™ Software. SeqGeq™ Software includes a wide suite of informatics features including: V(D)J analysis, Seurat clustering, Monocle trajectory inference and much more.

 

SeqGeq™ Software allows researchers to perform advanced analysis, data exploration and visualization with an easy-to-use drag-and-drop interface familiar to anyone who uses FlowJo™ Software. SeqGeq™ Software generates quality figures that are easily shared for publication and collaboration.

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FEATURES




SeqGeq™ Software has an intuitive drag-and-drop interface and lets you:

  • Easily import your scRNA-seq data from any platform
  • Perform dimensionality reduction with tSNE, PCA and LDA
  • Select populations of interest using intuitive gating tools
  • Identify, compare and contrast differentially expressed genes
  • Generate publication-ready figures using powerful visualization tools



Powerful tools help you dive deep into single-cell gene expression

  • Differential expression analysis in volcano plots allows statistically rigorous exploration of up- and downregulated genes
  • Gene set enrichment analysis—to define biological function and identify target genes of interest
  • Quality control, which creates QC parameters used to remove outliers, debris and doublets
  • More tools including those with which to map developmental trajectory, handle dropouts and categorical variables, and many more available as plugins on the FlowJo Exchange




Open-ended plugin architecture helps your research stay ahead of the curve.

SeqGeq™ Software offers plugins that help bring informatics innovation to you quickly and intuitively. Current offerings include but are not limited to:
  • Seurat
  • ViolinBox
  • BatchLR
  • TriMap
  • iCellR

Download and see the complete library of plugins available on the FlowJo Exchange!

NEW UPDATES

The latest release of SeqGeq™ v1.7 Software

  • This update contains several workflow improvements to streamline your analysis.
  • Issues with the Save function have been fixed. This extends to the auto-save dialog created when closing a workspace. It should no longer be necessary to always use the Save As function and make successive versions or save excessive copies of .geqzip analysis files.
  • Updated to run with Java 9.
  • Single-cell heatmap data in Layouts is now cached so updates to heatmaps following their initial creation will be faster.